Single Cell Genomics Japan

論文一覧

接合子、卵割球、桑実胚、胚盤胞(マウス)Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND, Robson P.Dev Cell. 2010 Apr 20;18(4):675-85.
接合子、卵割球、桑実胚、胚盤胞(ヒト、マウス)Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE, Hu TX, Elder K, Snell P, Christie L, Robson P, Niakan KK.Development. 2015 Oct 15;142(20):3613.
Xue Z, Huang K, Cai C, Cai L, Jiang CY, Feng Y, Liu Z, Zeng Q, Cheng L, Sun YE, Liu JY, Horvath S, Fan G Nature. 500, 593-7, 2013
着床前胚(ヒト)Yan L, Yang M, Guo H, Yang L, Wu J, Li R, Liu P, Lian Y, Zheng X, Yan J, Huang J, Li M, Wu X, Wen L, Lao K, Li R, Qiao J, Tang F.Nat Struct Mol Biol. 2013 Sep;20(9):1131-9. 
着床前胚(ヒト)Qiu JJ, Ren ZR, Yan JB.Oncotarget. 2016 Sep 20;7(38):61215-61228.
着床前胚(マウス)Fan X, Zhang X, Wu X, Guo H, Hu Y, Tang F, Huang YGenome Biol. 2015 Jul 23;16:148.
着床前胚(ヒト、マウス)Shi J, Chen Q, Li X, Zheng X, Zhang Y, Qiao J, Tang F, Tao Y, Zhou Q, Duan E.Development. 2015 Oct 15;142(20):3468-77.
着床前胚(サル)Wang X, Liu D, He D, Suo S, Xia X, He X, Han JJ, Zheng P.Genome Res. 2017 Apr;27(4):567-579.
着床前後胚(サル)Nakamura T, Okamoto I, Sasaki K, Yabuta Y, Iwatani C, Tsuchiya H, Seita Y, Nakamura S, Yamamoto T, Saitou MNature. 537, 57-62, 2016.
初期胚(マウス、ヒト)
ESC、エピブラスト(マウス)Tang F, Barbacioru C, Bao S, Lee C, Nordman E, Wang X, Lao K, Surani MA.Cell Stem Cell. 2010 May 7;6(5):468-78. 
ESC、胚体内胚葉(ヒト)Chu LF, Leng N, Zhang J, Hou Z, Mamott D, Vereide DT, Choi J, Kendziorski C, Stewart R, Thomson JA.Genome Biol. 2016 Aug 17;17(1):173. 
ESC、分化誘導神経(ヒト)Yao Z, Mich JK, Ku S, Menon V, Krostag AR, Martinez RA, Furchtgott L, Mulholland H, Bort S, Fuqua MA, Gregor BW, Hodge RD, Jayabalu A, May RC, Melton S, Nelson AM, Ngo NK, Shapovalova NV, Shehata SI, Smith MW, Tait LJ, Thompson CL, Thomsen ER, Ye C, Glass IA, Kaykas A, Yao S, Phillips JW, Grimley JS, Levi BP, Wang Y, Ramanathan S.Cell Stem Cell. 2017 Jan 5;20(1):120-134.
ESC、分化誘導神経(ヒト)Close JL, Yao Z, Levi BP, Miller JA, Bakken TE, Menon V, Ting JT, Wall A, Krostag AR, Thomsen ER, Nelson AM, Mich JK, Hodge RD, Shehata SI, Glass IA, Bort S, Shapovalova NV, Ngo NK, Grimley JS, Phillips JW, Thompson CL, Ramanathan S, Lein E.Neuron. 2017 Mar 8;93(5):1035-1048.e5.
iPSC、分化誘導神経(ヒト)Song Y, Botvinnik OB, Lovci MT, Kakaradov B, Liu P, Xu JL, Yeo GW.Mol Cell. In press
ESC、分化誘導神経(マウス)Rizvi AH, Camara PG, Kandror EK, Roberts TJ, Schieren I, Maniatis T, Rabadan R.Nat Biotechnol. 2017 Jun;35(6):551-560.
神経前駆細胞、神経細胞(ヒト)Kee N, Volakakis N, Kirkeby A, Dahl L, Storvall H, Nolbrant S, Lahti L, Björklund ÅK, Gillberg L, Joodmardi E, Sandberg R, Parmar M, Perlmann T.Cell Stem Cell. 2017 Jan 5;20(1):29-40.
初期胚(マウス)Wen J, Zeng Y, Fang Z, Gu J, Ge L, Tang F, Qu Z, Hu J, Cui Y, Zhang K, Wang J, Li S, Sun Y, Jin Y.J Biol Chem. 2017 Jun 9;292(23):9840-9854.
初期発生、中胚葉(マウス)Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B.Nature. 2016 Jul 14;535(7611):289-93.
繊維芽細胞、 iPSC、ESC(マウス)Buganim Y, Faddah DA, Cheng AW, Itskovich E, Markoulaki S, Ganz K, Klemm SL, van Oudenaarden A, Jaenisch R.Cell. 2012 Sep 14;150(6):1209-22. 
繊維芽細胞、iPS細胞(ヒト)Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, Donaghey J, Smith ZD, Ratanasirintrawoot S, Zhang X, Ho Sui SJ, Wu Z, Akopian V, Gifford CA, Doench J, Rinn JL, Daley GQ, Meissner A, Lander ES, Mikkelsen TS.Cell. 2015 May 21;161(5):1187-201.
繊維芽細胞、誘導神経細胞(マウス)Treutlein B, Lee QY, Camp JG, Mall M, Koh W, Shariati SA, Sim S, Neff NF, Skotheim JM, Wernig M, Quake SR.Nature. 2016 Jun 16;534(7607):391-5.
海馬(マウス)Gao Y, Wang F, Eisinger BE, Kelnhofer LE, Jobe EM, Zhao X.Cereb Cortex. 2017 Mar 1;27(3):2064-2077.
神経幹細胞(マウス)Dulken BW, Leeman DS, Boutet SC, Hebestreit K, Brunet ACell Rep. 18, 777-790, 2017.
神経幹細胞(マウス)Chung S, Weber F, Zhong P, Tan CL, Nguyen TN, Beier KT, Hörmann N, Chang WC, Zhang Z, Do JP, Yao S, Krashes MJ, Tasic B, Cetin A, Zeng H, Knight ZA, Luo L, Dan Y.Nature. 2017 May 25;545(7655):477-481.
神経細胞(マウス)Scholz P, Kalbe B, Jansen F, Altmueller J, Becker C, Mohrhardt J, Schreiner B, Gisselmann G, Hatt H, Osterloh S.Chem Senses. 2016 May;41(4):313-23.
ESC由来神経細胞(ヒト)Close JL, Yao Z, Levi BP, Miller JA, Bakken TE, Menon V, Ting JT, Wall A, Krostag AR, Thomsen ER, Nelson AM, Mich JK, Hodge RD, Shehata SI, Glass IA, Bort S, Shapovalova NV, Ngo NK, Grimley JS, Phillips JW, Thompson CL, Ramanathan S, Lein E.Neuron. 2017 Mar 8;93(5):1035-1048.e5
iPS細胞、神経前駆細胞(ヒト)Hu Y, Hase T, Li HP, Prabhakar S, Kitano H, Ng SK, Ghosh S, Wee LJ.BMC Genomics. 2016 Dec 22;17(Suppl 13):1025.
iPS細胞、神経前駆細胞(ヒト)Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, Toppani D, Kemp DW 2nd, Wong M, Clerkson B, Jones BN, Wu S, Knutsson L, Alvarado B, Wang J, Weaver LS, May AP, Jones RC, Unger MA, Kriegstein AR, West JA.Nat Biotechnol. 2014 Oct;32(10):1053-8.
iPSC由来神経細胞(ヒト)Bardy C, van den Hurk M, Kakaradov B, Erwin JA, Jaeger BN, Hernandez RV, Eames T, Paucar AA, Gorris M, Marchand C, Jappelli R, Barron J, Bryant AK, Kellogg M, Lasken RS, Rutten BP, Steinbusch HW, Yeo GW, Gage FH.Mol Psychiatry. 2016 Nov;21(11):1573-1588.
大脳オルガノイド(ヒト)Camp JG, Badsha F, Florio M, Kanton S, Gerber T, Wilsch-Bräuninger M, Lewitus E, Sykes A, Hevers W, Lancaster M, Knoblich JA, Lachmann R, Pääbo S, Huttner WB, Treutlein B.Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15672-7.
皮質(ヒト)Furchtgott LA, Melton S, Menon V, Ramanathan S.Elife. 2017 Mar 15;6. pii: e20488.
中脳(ヒト、マウス)La Manno G, Gyllborg D, Codeluppi S, Nishimura K, Salto C, Zeisel A, Borm LE, Stott SR, Toledo EM, Villaescusa JC, Lönnerberg P, Ryge J, Barker RA, Arenas E, Linnarsson S.Cell. 2016 Oct 6;167(2):566-580.e19.
造血幹細胞及び血液細胞(マウス)Wilson NK, Kent DG, Buettner F, Shehata M, Macaulay IC, Calero-Nieto FJ, Sánchez Castillo M, Oedekoven CA, Diamanti E, Schulte R, Ponting CP, Voet T, Caldas C, Stingl J, Green AR, Theis FJ, Göttgens B.Cell Stem Cell. 2015 Jun 4;16(6):712-24.
造血幹細胞及び血液細胞(マウス)Hamey FK, Nestorowa S, Kinston SJ, Kent DG, Wilson NK, Göttgens B.Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5822-5829.
造血幹細胞及び血液細胞(マウス)Nestorowa S, Hamey FK, Pijuan Sala B, Diamanti E, Shepherd M, Laurenti E, Wilson NK, Kent DG, Göttgens B.Blood. 2016 Aug 25;128(8):e20-31.
造血幹細胞及び血液細胞(マウス)Zeng W, Jiang S, Kong X, El-Ali N, Ball AR Jr, Ma CI, Hashimoto N, Yokomori K, Mortazavi A.Nucleic Acids Res. 2016 Dec 1;44(21):e158.
造血幹細胞及び血液細胞(マウス)Moignard V, Macaulay IC, Swiers G, Buettner F, Schütte J, Calero-Nieto FJ, Kinston S, Joshi A, Hannah R, Theis FJ, Jacobsen SE, de Bruijn MF, Göttgens B.Nat Cell Biol. 2013 Apr;15(4):363-72.
血液細胞(ヒト)Villani AC, Satija R, Reynolds G, Sarkizova S, Shekhar K, Fletcher J, Griesbeck M, Butler A, Zheng S, Lazo S, Jardine L, Dixon D, Stephenson E, Nilsson E, Grundberg I, McDonald D, Filby A, Li W, De Jager PL, Rozenblatt-Rosen O, Lane AA, Haniffa M, Regev A, Hacohen N.Science. 2017 Apr 21;356(6335).
T細胞(マウス)Lönnberg T, Svensson V, James KR, Fernandez-Ruiz D, Sebina I, Montandon R, Soon MS, Fogg LG, Nair AS, Liligeto U, Stubbington MJ, Ly LH, Bagger FO, Zwiessele M, Lawrence ND, Souza-Fonseca-Guimaraes F, Bunn PT, Engwerda CR, Heath WR, Billker O, Stegle O, Haque A, Teichmann SA.Sci Immunol. 2017 Mar 3;2(9). pii: eaal2192.
T細胞(ヒト)Eltahla AA, Rizzetto S, Pirozyan MR, Betz-Stablein BD, Venturi V, Kedzierska K, Lloyd AR, Bull RA, Luciani F.Immunol Cell Biol. 2016 Jul;94(6):604-11.
自然リンパ球(マウス)Suffiotti M, Carmona SJ, Jandus C, Gfeller D.Immunogenetics. 2017 Jul;69(7):439-450.
間葉系幹細胞(マウス)Freeman BT, Jung JP, Ogle BM.PLoS One. 2015 Sep 9;10(9):e0136199.
胎児心臓、初期胚(マウス)DeLaughter DM, Bick AG, Wakimoto H, McKean D, Gorham JM, Kathiriya IS, Hinson JT, Homsy J, Gray J, Pu W, Bruneau BG, Seidman JG, Seidman CE.Dev Cell. 2016 Nov 21;39(4):480-490.
胎児肺(マウス)Treutlein B, Brownfield DG, Wu AR, Neff NF, Mantalas GL, Espinoza FH, Desai TJ, Krasnow MA, Quake SR.Nature. 2014 May 15;509(7500):371-5.
ESC/iPSC由来耳組織(ヒト)Ealy M, Ellwanger DC, Kosaric N, Stapper AP, Heller S.Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8508-13. 
子宮(マウス)Wu B, An C, Li Y, Yin Z, Gong L, Li Z, Liu Y, Heng BC, Zhang D, Ouyang H, Zou X.Stem Cell Reports. 2017 Jun 14. pii: S2213-6711(17)30229-1.
膵臓(マウス)Qiu WL, Zhang YW, Feng Y, Li LC, Yang L, Xu CR.Cell Metab. 2017 May 2;25(5):1194-1205.e4.
膵臓(マウス)Zeng C, Mulas F, Sui Y, Guan T, Miller N, Tan Y, Liu F, Jin W, Carrano AC, Huising MO, Shirihai OS, Yeo GW, Sander M.Cell Metab. 2017 May 2;25(5):1160-1175.e11.
膵臓(マウス)Stanescu DE, Yu R, Won KJ, Stoffers DA.Physiol Genomics. 2017 Feb 1;49(2):105-114.
腎糸球体(マウス)Lu Y, Ye Y, Yang Q, Shi S.Kidney Int. 2017 Mar 17. pii: S0085-2538(17)30067-4.
筋芽細胞(ヒト)Zeng W, Jiang S, Kong X, El-Ali N, Ball AR Jr, Ma CI, Hashimoto N, Yokomori K, Mortazavi A.Nucleic Acids Res. 2016 Dec 1;44(21):e158.
頚動脈小体(マウス)Zhou T, Chien MS, Kaleem S, Matsunami H.J Physiol. 2016 Aug 1;594(15):4225-51.
細胞分類/異種細胞間相互作用
生殖細胞(ヒト)Li L, Dong J, Yan L, Yong J, Liu X, Hu Y, Fan X, Wu X, Guo H, Wang X, Zhu X, Li R, Yan J, Wei Y, Zhao Y, Wang W, Ren Y, Yuan P, Yan Z, Hu B, Guo F, Wen L, Tang F, Qiao J.Cell Stem Cell. 2017 Jun 1;20(6):891-892.
精巣(ヒト)Neuhaus N, Yoon J, Terwort N, Kliesch S, Seggewiss J, Huge A, Voss R, Schlatt S, Grindberg RV, Schöler HR.Mol Hum Reprod. 2017 Feb 10;23(2):79-90.
初期胚、脳、肝臓、精巣(マウス)Chen J, Suo S, Tam PP, Han JJ, Peng G, Jing N.Nat Protoc. 2017 Mar;12(3):566-580.
ESC(マウス)Grün D, Kester L, van Oudenaarden A.Nat Methods. 2014 Jun;11(6):637-40.
ESC(マウス)Kumar RM, Cahan P, Shalek AK, Satija R, DaleyKeyser AJ, Li H, Zhang J, Pardee K, Gennert D, Trombetta JJ, Ferrante TC, Regev A, Daley GQ, Collins JJ.Nature. 2014 Dec 4;516(7529):56-61.
ESC(マウス)Klein AM, Mazutis L, Akartuna I, Tallapragada N, Veres A, Li V, Peshkin L, Weitz DA, Kirschner MW.Cell. 2015 May 21;161(5):1187-201.
ESC(マウス)Welch JD, Hu Y, Prins JF.Nucleic Acids Res. 2016 May 5;44(8):e73.
ESC(マウス、ヒト)Mantsoki A, Devailly G, Joshi A.Comput Biol Chem. 2016 Aug;63:52-61.
ESC、前駆細胞、体細胞(ヒト)Teschendorff AE, Enver T.Nat Commun. 2017 Jun 1;8:15599.
ESC、神経前駆細胞(ヒト)Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C.Genome Biol. 2016 Oct 25;17(1):222.
ESC(マウス)Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O.Nat Biotechnol. 2015 Feb;33(2):155-60.
間葉系幹細胞(ヒト)Zhao X, Han Y, Liang Y, Nie C, Wang J.PLoS One. 2016 Feb 22;11(2):e0149171.
神経細胞(マウス)Lacar B, Linker SB, Jaeger BN, Krishnaswami S, Barron J, Kelder M, Parylak S, Paquola A, Venepally P, Novotny M, O’Connor C, Fitzpatrick C, Erwin J, Hsu JY, Husband D, McConnell MJ, Lasken R, Gage FH.Nat Commun. 2016 Apr 19;7:11022.
胎児脳(ヒト)Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA.Genome Biol. 2016 Apr 14;17:67.
成人脳、胎児脳(ヒト)Darmanis S, Sloan SA, Zhang Y, Enge M, Caneda C, Shuer LM, Hayden Gephart MG, Barres BA, Quake SR.Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7285-90.
新生児脳(ヒト)Habib N, Li Y, Heidenreich M, Swiech L, Avraham-Davidi I, Trombetta JJ, Hession C, Zhang F, Regev A.Science. 2016 Aug 26;353(6302):925-8.
iPSC/胎児由来神経幹細胞(ヒト、チンパンジー)Mora-Bermúdez F, Badsha F, Kanton S, Camp JG, Vernot B, Köhler K, Voigt B, Okita K, Maricic T, He Z, Lachmann R, Pääbo S, Treutlein B, Huttner WB.Elife. 2016 Sep 26;5. pii: e18683.
iPSC由来神経組織Handel AE, Chintawar S, Lalic T, Whiteley E, Vowles J, Giustacchini A, Argoud K, Sopp P, Nakanishi M, Bowden R, Cowley S, Newey S, Akerman C, Ponting CP, Cader MZ.Hum Mol Genet. 2016 Mar 1;25(5):989-1000.
iPSC由来神経組織Schwartz MP, Hou Z, Propson NE, Zhang J, Engstrom CJ, Santos Costa V, Jiang P, Nguyen BK, Bolin JM, Daly W, Wang Y, Stewart R, Page CD, Murphy WL, Thomson JA.Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):12516-21.
ESC/iPSC由来人工脳組織(ヒト)Quadrato G, Nguyen T, Macosko EZ, Sherwood JL, Min Yang S, Berger DR, Maria N, Scholvin J, Goldman M, Kinney JP, Boyden ES, Lichtman JW, Williams ZM, McCarroll SA, Arlotta P.Nature. 2017 May 4;545(7652):48-53. 
iPSC由来人工脳組織(ヒト)Birey F, Andersen J, Makinson CD, Islam S, Wei W, Huber N, Fan HC, Metzler KRC, Panagiotakos G, Thom N, O’Rourke NA, Steinmetz LM, Bernstein JA, Hallmayer J, Huguenard JR, Paşca SP.Nature. 2017 May 4;545(7652):54-59.
神経組織(マウス、ヒト)Nichterwitz S, Chen G, Aguila Benitez J, Yilmaz M, Storvall H, Cao M, Sandberg R, Deng Q, Hedlund E.Nat Commun. 2016 Jul 8;7:12139.
神経(マウス)Fuzik J, Zeisel A, Máté Z, Calvigioni D, Yanagawa Y, Szabó G, Linnarsson S, Harkany TNat Biotechnol. 2016 Feb;34(2):175-83.
皮質(マウス)Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, Smith K, Bernard A, Madisen L, Sunkin SM, Hawrylycz M, Koch C, Zeng H.Nat Neurosci. 2016 Feb;19(2):335-46.
中脳組織(マウス)Poulin JF, Zou J, Drouin-Ouellet J, Kim KY, Cicchetti F, Awatramani RB.Cell Rep. 2014 Nov 6;9(3):930-43.
後脳組織(マウス)Okaty BW, Freret ME, Rood BD, Brust RD, Hennessy ML, deBairos D, Kim JC, Cook MN, Dymecki SM.Neuron. 2015 Nov 18;88(4):774-91.
海馬、皮質(マウス)Zeisel A, Muñoz-Manchado AB, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S.Science. 2015 Mar 6;347(6226):1138-42.
皮質(マウス)Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, Smith K, Bernard A, Madisen L, Sunkin SM, Hawrylycz M, Koch C, Zeng H.Nat Neurosci. 2016 Feb;19(2):335-46.
皮質(マウス)Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS.Nat Biotechnol. 2016 Feb;34(2):199-203.
皮質(マウス)Fuzik J, Zeisel A, Máté Z, Calvigioni D, Yanagawa Y, Szabó G, Linnarsson S, Harkany T.Nat Biotechnol. 2016 Feb;34(2):175-83.
皮質(マウス)Chen R, Wu X, Jiang L, Zhang Y.Cell Rep. 2017 Mar 28;18(13):3227-3241.
感覚神経(マウス)Usoskin D, Furlan A, Islam S, Abdo H, Lönnerberg P, Lou D, Hjerling-Leffler J, Haeggström J, Kharchenko O, Kharchenko PV, Linnarsson S, Ernfors P.Nat Neurosci. 2015 Jan;18(1):145-53.
感覚神経(マウス)Li CL, Li KC, Wu D, Chen Y, Luo H, Zhao JR, Wang SS, Sun MM, Lu YJ, Zhong YQ, Hu XY, Hou R, Zhou BB, Bao L, Xiao HS, Zhang X.Cell Res. 2016 Aug;26(8):967.
感覚神経(マウス)Scholz P, Kalbe B, Jansen F, Altmueller J, Becker C, Mohrhardt J, Schreiner B, Gisselmann G, Hatt H, Osterloh S.Chem Senses. 2016 May;41(4):313-23. 
線条体(マウス)Gokce O, Stanley GM, Treutlein B, Neff NF, Camp JG, Malenka RC, Rothwell PE, Fuccillo MV, Südhof TC, Quake SR.Cell Rep. 2016 Jul 26;16(4):1126-37.
嗅粘膜(マウス)Saraiva LR, Ibarra-Soria X, Khan M, Omura M, Scialdone A, Mombaerts P, Marioni JC, Logan DW.Sci Rep. 2015 Dec 16;5:18178.
網膜双極神経(マウス)Shekhar K, Lapan SW, Whitney IE, Tran NM, Macosko EZ, Kowalczyk M, Adiconis X, Levin JZ, Nemesh J, Goldman M, McCarroll SA, Cepko CL, Regev A, Sanes JR.Cell. 2016 Aug 25;166(5):1308-1323.e30. 
網膜(マウス)Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, Tirosh I, Bialas AR, Kamitaki N, Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A, McCarroll SA.Cell. 2015 May 21;161(5):1202-14.
内耳(マウス)Burns JC, Kelly MC, Hoa M, Morell RJ, Kelley MW.Nat Commun. 2015 Oct 15;6:8557.
膵臓(マウス、ヒト)Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I.Cell Syst. 2016 Oct 26;3(4):346-360.e4.
膵島細胞(ヒト)Wang YJ, Schug J, Won KJ, Liu C, Naji A, Avrahami D, Golson ML, Kaestner KH.Diabetes. 2016 Oct;65(10):3028-38.
膵臓(ヒト)Li J, Klughammer J, Farlik M, Penz T, Spittler A, Barbieux C, Berishvili E, Bock C, Kubicek S.EMBO Rep. 2016 Feb;17(2):178-87. 
膵臓前駆細胞(マウス)Stanescu DE, Yu R, Won KJ, Stoffers DA.Physiol Genomics. 2017 Feb 1;49(2):105-114.
造血幹細胞(マウス)Tsang JC, Yu Y, Burke S, Buettner F, Wang C, Kolodziejczyk AA, Teichmann SA, Lu L, Liu P.Genome Biol. 2015 Sep 21;16:178. 
造血幹細胞(マウス)Kowalczyk MS, Tirosh I, Heckl D, Rao TN, Dixit A, Haas BJ, Schneider RK, Wagers AJ, Ebert BL, Regev A.Genome Res. 2015 Dec;25(12):1860-72.
T細胞(マウス)Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA.Genome Biol. 2016 May 12;17:103.
ヘルパーT細胞(マウス)Cell. 2015 Dec 3;163(6):1413-27.Wang C, Yosef N, Gaublomme J, Wu C, Lee Y, Clish CB, Kaminski J, Xiao S, Meyer Zu Horste G, Pawlak M, Kishi Y, Joller N, Karwacz K, Zhu C, Ordovas-Montanes M, Madi A, Wortman I, Miyazaki T, Sobel RA, Park H, Regev A, Kuchroo VK.
ヘルパーT細胞(マウス)Cell. 2015 Dec 3;163(6):1400-12.Gaublomme JT, Yosef N, Lee Y, Gertner RS, Yang LV, Wu C, Pandolfi PP, Mak T, Satija R, Shalek AK, Kuchroo VK, Park H, Regev A.
iPSC由来人工肝組織(ヒト)Nature. 2017 Jun 22;546(7659):533-538.Camp JG, Sekine K, Gerber T, Loeffler-Wirth H, Binder H, Gac M, Kanton S, Kageyama J, Damm G, Seehofer D, Belicova L, Bickle M, Barsacchi R, Okuda R, Yoshizawa E, Kimura M, Ayabe H, Taniguchi H, Takebe T, Treutlein B.
毛根幹細胞(マウス)Yang H, Adam RC, Ge Y, Hua ZL, Fuchs E.Cell. 2017 Apr 20;169(3):483-496.e13.
融合細胞(マウス、ヒト)Freeman BT, Jung JP, Ogle BM.Sci Rep. 2016 Mar 21;6:23270.
融合胚(ブタ)Bai L, Li M, Sun J, Yang X, Lu Y, Lu S, Lu K.PLoS One. 2016 Apr 12;11(4):e0153093.
アリル別遺伝子発現変化とX染色体不活性化
接合子、卵割球、胚盤胞(マウス)Deng Q, Ramsköld D, Reinius B, Sandberg R.Science. 2014 Jan 10;343(6167):193-6.
ESC、胚様体(マウス)Marks H, Kerstens HH, Barakat TS, Splinter E, Dirks RA, van Mierlo G, Joshi O, Wang SY, Babak T, Albers CA, Kalkan T, Smith A, Jouneau A, de Laat W, Gribnau J, Stunnenberg HG.Genome Biol. 2015 Aug 3;16:149. 
ESC、エピブラスト(マウス)Chen G, Schell JP, Benitez JA, Petropoulos S, Yilmaz M, Reinius B, Alekseenko Z, Shi L, Hedlund E, Lanner F, Sandberg R, Deng Q.Genome Res. 2016 Oct;26(10):1342-1354.
着床前胚(ヒト)Petropoulos S, Edsgärd D, Reinius B, Deng Q, Panula SP, Codeluppi S, Reyes AP, Linnarsson S, Sandberg R, Lanner F.Cell. 2016 May 5;165(4):1012-26. 
繊維芽細胞(マウス)、T細胞(ヒト)Reinius B, Mold JE, Ramsköld D, Deng Q, Johnsson P, Michaëlsson J, Frisén J, Sandberg R.Nat Genet. 2016 Nov;48(11):1430-1435.
ESC(マウス)Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC.Nat Commun. 2015 Oct 22;6:8687.
初期胚、生殖細胞(マウス)Li X, Hu Z, Yu X, Zhang C, Ma B, He L, Wei C, Wu J.Sci Rep. 2017 Jun 16;7(1):3729.
ESC(ヒト)Sahakyan A, Kim R, Chronis C, Sabri S, Bonora G, Theunissen TW, Kuoy E, Langerman J, Clark AT, Jaenisch R, Plath KCell Stem Cell. 2017 Jan 5;20(1):87-101.